Molecule Tutorials - Herong's Tutorial Examples
∟Gene Mutation
∟What Is Point Mutation
Provides a quick introduction of point mutation, which is a gene mutation that changes a single nucleotide base pair of DNA or RNA.
What Is Point Mutation? -
A point mutation, also called base-pair substitution, is a
gene mutation that changes a single nucleotide base pair of DNA or RNA.
Point mutations can be categorized based on the impact on protein expression.
- Silent Mutation: Although a change in the DNA sequence occurs, this type of
mutation does not change the protein that is to be produced. This is because
multiple genetic codons can encode for the same amino acid. Amino acids are
coded for by three-nucleotide sets called codons. For example, the amino acid
arginine is coded for by several DNA codons including CGT, CGC, CGA, and CGG (A
= adenine, T = thymine, G = guanine, and C = cytosine). If the DNA sequence CGC
is changed to CGA, the amino acid arginine will still be produced.
- Missense Mutation: This type of mutation alters the nucleotide sequence so that
different amino acid is produced. This change alters the resulting protein. The
change may not have much effect on the protein, may be beneficial to protein
function, or may be dangerous. Using our previous example, if the codon for
arginine CGC is changed to GGC, the amino acid glycine will be produced instead
of arginine.
- Nonsense Mutation: This type of mutation alters the nucleotide sequence so that
a stop codon is coded in place of amino acid. A stop codon signals the end
of the translation process and stops protein production. If this process is
ended too soon, the amino acid sequence is cut short and the resulting protein
is most always nonfunctional.
Table of Contents
About This Book
Introduction of Molecules
Molecule Names and Identifications
Molecule Mass and Weight
Protein and Amino Acid
Nucleobase, Nucleoside, Nucleotide, DNA and RNA
Gene and Chromosome
Protein Kinase (PK)
DNA Sequencing
►Gene Mutation
What Is Gene Mutation
►What Is Point Mutation
Base-Pair Insertion and Deletion
Gene Mutation Inheritance Likelihood
Types of Genetic Testing
Mutation Detection with NGS
What Is Allele Frequency
What Is VCF (Variant Calling Format)
"vcftools" - VCF Utility Command
What Is VAF (Variant Allele Frequency)
Gene Mutation Naming Convention
Gene Mutation Test Report
What Is ctDNA Testing
Sanger Sequencing Test Report
SDF (Structure Data File)
PyMol Installation
PyMol GUI and CLI
PyMol Selections
PyMol Editing Functions
PyMol Measurement Functions
PyMol Movie Functions
PyMol Python Integration
PyMol Object Functions
ChEMBL Database - European Molecular Biology Laboratory
PubChem Database - National Library of Medicine
PDB (Protein Data Bank)
INSDC (International Nucleotide Sequence Database Collaboration)
HGNC (HUGO Gene Nomenclature Committee)
Relocated Tutorials
Resources and Tools
Molecule Related Terminologies
References
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