Base-Pair Insertion and Deletion

Provides a quick introduction of base-pair insertion and deletion, where some nucleotide base pairs are inserted into or deleted from the original gene sequence.

What Is Base-Pair Insertion and Deletion? - A base-pair insertion and deletion is a gene mutation where some nucleotides are inserted into or deleted from the original gene sequence.

This type of gene mutation is dangerous because it alters the template from which amino acids are read. Insertions and deletions can cause frame-shift mutations when base pairs that are not a multiple of three are added to or deleted from the sequence. Since the nucleotide sequences are read in groupings of three, this will cause a shift in the reading frame.

For example, you can read 4 codon frames from this DNA sequence: CGA-CCA-ACG-GCG. But if 2 nucleotides, GA, are inserted after position 6, the reading frames are changed to: CGA-CCA-(GA)A-CGG-CG.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

Gene Mutation

 What Is Gene Mutation

 What Is Point Mutation

Base-Pair Insertion and Deletion

 Gene Mutation Inheritance Likelihood

 Types of Genetic Testing

 Mutation Detection with NGS

 What Is Allele Frequency

 What Is VCF (Variant Calling Format)

 "vcftools" - VCF Utility Command

 What Is VAF (Variant Allele Frequency)

 Gene Mutation Naming Convention

 Gene Mutation Test Report

 What Is ctDNA Testing

 Sanger Sequencing Test Report

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB