Protein and Amino Acid

This chapter provides quick introductions about proteins and amino acids.

What Is Amino Acid

The 20 Common Amino Acids

Peptide, Peptide Bond, Amino Acid Residues

What Is Protein

Protein Structure Levels

Alpha Helix and Beta Sheet

Protein Visualization - Ribbon Diagram

Composed Proteins or Protein Complexes

wwpdb.org - Worldwide PDB (Protein Data Bank)

What Is FASTA

Takeaways:

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 SDF (Structure Data File)

 RDKit: Open-Source Cheminformatics Software

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB