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What Is RDKit
This section provides a quick introduction of RDKit, a collection of cheminformatics and machine-learning software written in C++ and Python. 2022-10-19, ∼423🔥, 0💬

Scale SVG Images using "viewBox" Attribute
This section provides a tutorial example on how to scale SVG images by changing 'viewBox' attributes in molecule SVG file generated by Open Babel 'obabel ... -o svg' command. 2022-10-19, ∼350🔥, 0💬

"obchiral" - Print Chirality Information
This section provides a quick introduction on the 'obchiral' command provided in Open Babel package to print chirality information. 2022-10-19, ∼465🔥, 0💬

"obminimize" - Optimize Geometry/Energy of Molecule
This section provides a quick introduction on the 'obminimize' command provided in Open Babel package to optimize geometry and energy of molecules. 2022-10-19, ∼492🔥, 0💬

Substructure Search with Wildcard Bond "~"
This section provides a tutorial example on how to use '~' to represent a wildcard bond in SMARTS string to do substructure search using 'obabel ... -s ...' command with Open Babel. 2022-10-17, ∼234🔥, 0💬

What Is rdkit.Chem.rdmolfiles Module
This section provides a quick introduction of the molecule file module of the RDKit library, rdkit.Chem.rdmolfiles, which provides functionalities to handle molecule strings/files with different formats like SMILES, SDF, FASTA, SVG, etc.. 2022-10-17, ∼482🔥, 0💬

rdkit.Chem.rdchem - The Core Module
This chapter provides introductions and tutorial examples on rdkit.Chem.rdchem module. Topics include introduction of rdkit.Chem.rdchem module and its main classes: Mol, Atom, Bond, RWMol. 2022-10-16, ∼432🔥, 0💬

Hash over Double Bond by Open Babel
This section provides a tutorial example demonstrating how Open Babel 'correcting' wedge-hash bond representations of stereo centers from molecule input data. 2022-10-14, ∼337🔥, 0💬

"babel ... -o svg -xd -xP300" - Open Babel 2.4 Bug
This section provides a tutorial example demonstrating a code bug in 'babel -o svg -xd -xP300' command in Open Babel 2.4. 2022-10-13, ∼275🔥, 0💬

Install RDKit Binary Package for CentOS
This section provides some notes on trying to find a RDKit binary package for my CentOS computer, but with no success. 2022-10-13, ∼365🔥, 0💬

Similarity Search with Open Babel
This chapter provides introductions and tutorial examples on Open Babel 'obabel ... -o fpt' command to do molecule similarity search. Topics include performing similarity search; generating different types of molecule fingerprints; displaying fingerprint ragments. 2022-10-13, ∼399🔥, 0💬

Read Stereoinformation from Input with Open Babel
This section provides a quick introduction how stereochemistry information is stored in input molecule data in 3 ways: 0D, 2D, and 3D. 2022-10-10, ∼338🔥, 0💬

Stereochemistry with Open Babel
This chapter provides introductions and tutorial examples on stereochemistry with Open Babel. Topics include introduction of stereochemistry; reading stereochemistry information from input molecule defined in 0D, 2D and 3D format; Stereo Perception performed by Open Babel. 2022-10-10, ∼446🔥, 0💬

"obfit" - Superimpose Two Molecules
This section provides a quick introduction on the 'obfit' command provided in Open Babel package to superimpose two molecules. 2022-10-10, ∼351🔥, 0💬

SmilesMolSupplier/SDWriter for SMILES Files
This section provides a tutorial example on how to use rdkit.Chem.rdmolfiles.SmilesMo lSupplier(f)and rdkit.Chem.rdmolfiles.SDWriter (f)methods to handle SMILES files with multiple molecules. 2022-10-10, ∼378🔥, 0💬

Build RDKit from Source Code on CentOS System
This section provides a tutorial example on how to install RDKit from source code on CentOS Linux systems, using GCC C/C++, make, cmake tools. 2022-10-09, ∼315🔥, 0💬

"obconformer" - Generate Best Conformer
This section provides a quick introduction on the 'obconformer' command provided in Open Babel package to generate best conformer. 2022-10-08, ∼327🔥, 0💬

List of Open Babel Command Line Tools
This section provides a list of command line tools provided by Open Babel. 2022-10-08, ∼370🔥, 0💬

Stereo Perception Performed by Open Babel
This section provides a quick introduction on the stereo perception performed by Open Babel, which is the process of constructing stereo centers with stereoinformation received from input data. 2022-10-08, ∼321🔥, 0💬

"obenergy" - Calculate Molecule Energy
This section provides a quick introduction on the 'obenergy' command provided in Open Babel package to calculate molecule energy. 2022-10-07, ∼338🔥, 0💬

"obgen" - Generate Molecule 3D Structures
This section provides a quick introduction on the 'obgen' command provided in Open Babel package to generate molecule 3D structure. 2022-10-07, ∼429🔥, 0💬

"obrotamer" - Generate Random Rotational Isomers
This section provides a quick introduction on the 'obrotamer' command provided in Open Babel package to generate random rotational isomers. 2022-10-06, ∼323🔥, 0💬

Command Line Tools Provided by Open Babel
This chapter provides introductions and tutorial examples on various command line tools provided by Open Babel. Topics include 'obconformer' to generate the best conformer; 'obfit' to superimpose two molecules; 'obgen' to generate 3D structures; 'obgrep' to search substructures; 'obminimize' to opti... 2022-10-06, ∼431🔥, 0💬

RDKit Installation Options
This section provides a quick introduction of RDKit installation options: Python library with Anaconda, Binary Package for CentOS, Build from source code. 2022-10-06, ∼477🔥, 0💬

<< < 1 2 3 4 5 6 7 8 > >>   ∑:170  Sort:Rank

Android ASP Astrology Big5 Bitcoin Blowfish Built-in C# Calendar CD-DVD Cheminformatics Chinese Cryptography DES Email Encoding Ethereum Flash GB2312 General H Herong History HTML Java JavaScript JDBC JSP JVM Linux Molecule Movie Music MySQL Neural Network Perl PHP Physics PKI Publication Python REST SOAP Sorting Swing TV Series UML Unicode VBScript Web Web-Services Windows WSDL XML XMLPad XSD XSL-FO