Molecule Tutorials - Herong's Tutorial Examples

∟PyMol Object Functions

∟Visualize Objects Independently

This section provides a tutorial on how to visualize objects independently with different representation styles in PyMol.

If you load multiple objects into a single state, you can visualize them independently with different representation styles.

The following PyMol session shows you how to show alcohol as "lines" and methane as "sticks": 

PyMOL>delete all
PyMOL>load Molecule-Methane.sdf, Methane, 1
PyMOL>load Molecule-Alcohol.sdf, Alcohol, 1

PyMOL>hide all
PyMOL>show sticks, Methane
PyMOL>show lines, Alcohol
Visualize Objects Independently in PyMol
Visualize Objects Independently in PyMol

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

►PyMol Object Functions

 What Is Object in PyMol

►Visualize Objects Independently

 Edit Objects Independently

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB