Molecule Tutorials - Herong's Tutorial Examples

∟PyMol Object Functions

∟Edit Objects Independently

This section provides a tutorial on how to edit objects independently with object name specified in 'translate', 'rotate', or other editing commands in PyMol.

If you load multiple objects into a single state, you can edit them independently with object name specified in "translate", "rotate", or other editing commands.

The following PyMol session shows you how to move methane away from alcohol: 

PyMOL>delete all
PyMOL>load Molecule-Methane.sdf, Methane, 1
PyMOL>load Molecule-Alcohol.sdf, Alcohol, 1

PyMOL>hide all
PyMOL>show sticks, Methane
PyMOL>show lines, Alcohol

PyMOL>translate [-1,1,0], Methane
Edit Objects Independently in PyMol
Edit Objects Independently in PyMol

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

►PyMol Object Functions

 What Is Object in PyMol

 Visualize Objects Independently

►Edit Objects Independently

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB