Molecule Tutorials - Herong's Tutorial Examples

∟PyMol Installation

∟Install PyMol Open Source Edition

This section provides a quick introduction on how to install PyMol open source edition on macOS.

If you want to try the open source edition of PyMol on macOS, you have 4 installation options.

1. Using Homebrew package manager - If you have Homebrew installed on your macOS, you can try the following command to install PyMol open source edition: 

brew install brewsci/bio/pymol

2. Using Fink package manager - If you have Fink installed on your macOS, you can try the following command to install PyMol open source edition: 

fink install pymol-py27

3. Using MacPort package manager - If you have MacPort installed on your macOS, you can try the following command to install PyMol open source edition: 

sudo port install pymol

4. Compiling from source code - If you known enough about compiling C/C++ source code on macOS, you can download PyMol source code and build MyPol from GitHub repository github.com/schrodinger/pymol-open-source.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

►PyMol Installation

 What Is PyMol

 Install PyMol Incentive Edition on macOS

►Install PyMol Open Source Edition

 Compile PyMol Source Code

 Install Open Source PyMol with Homedrew

 Install Open Source PyMol with Fink

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB