Molecule Tutorials - Herong's Tutorial Examples - v1.26, by Herong Yang
Download PubChem Database
This section provides a tutorial example on how to download and install a copy of the ChEMBL PubChem on a local computer.
If you want to run a local instance of the PubChem database, you can download a copy of its data as described in this tutorial.
1. Go to the PubChem FTP site at ftp://ftp.ncbi.nlm.nih.gov/pubchem/.
2. Log in a guest and go to "pubchem/Compound/CURRENT-Full/SDF/" directory.
3. Download one file at time. Files are large. So download may take some time.
You can also use a FTP client program to connect ftp://ftp.ncbi.nlm.nih.gov/pubchem/, and download /pubchem/Compound/CURRENT-Full/SDF/* files.
Table of Contents
Molecule Names and Identifications
Nucleobase, Nucleoside, Nucleotide, DNA and RNA
ChEMBL Database - European Molecular Biology Laboratory
►PubChem Database - National Library of Medicine
INSDC (International Nucleotide Sequence Database Collaboration)
HGNC (HUGO Gene Nomenclature Committee)