Download PubChem Database

This section provides a tutorial example on how to download and install a copy of the ChEMBL PubChem on a local computer.

If you want to run a local instance of the PubChem database, you can download a copy of its data as described in this tutorial.

1. Go to the PubChem FTP site at ftp://ftp.ncbi.nlm.nih.gov/pubchem/.

2. Log in a guest and go to "pubchem/Compound/CURRENT-Full/SDF/" directory.

3. Download one file at time. Files are large. So download may take some time.

You can also use a FTP client program to connect ftp://ftp.ncbi.nlm.nih.gov/pubchem/, and download /pubchem/Compound/CURRENT-Full/SDF/* files.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

PubChem Database - National Library of Medicine

 What Is PubChem

Download PubChem Database

 PubChem Data Sources

 PubChem Widgets for Web Pages

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB