Resources and Tools

List of resources and tools for molecule study.

Resources and tools useful for molecule study:

admetSAR - Free online SAR database.

ChEMBL - Free Online databases with Web services.

GOSTAR - Commecial online databases: compound, target, and chemistry.

HGNC - HUGO Gene Nomenclature Committee.

HPM - Human Proteome Map.

Molecular formats converter - URL: Provided by WebQC.Org.

Online SMILES Translator and Structure File Generator - URL: Provided by National Cancer Institution of US government.

Open Babel - The Open Source Chemistry Toolbox - URL:

RDKit: Open-Source Cheminformatics Software - URL: Provided by

UniProt: Universal Protein Resource -

鹰谷试剂商城 - Compound Web store.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 SDF (Structure Data File)

 RDKit: Open-Source Cheminformatics Software

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

Resources and Tools

 Molecule Related Terminologies


 Full Version in PDF/EPUB