Molecule Tutorials - Herong's Tutorial Examples - v1.26, by Herong Yang
Download ChEMBL Database
This section provides a tutorial example on how to download and install a copy of the ChEMBL database on a local computer.
If you want to run a local instance of the ChEMBL database, you can download a copy of its data in MySQL format as described in this tutorial.
1. Go to the ChEMBL Website at https://www.ebi.ac.uk/chembl/.
2. Click "Downloads" in the menu and select "ChEMBLdb 25" to go the download FTP directory.
3. Log in as a guest and go to the "latest" directory.
4. Download the chembl_25_mysql.tar.gz file. This may take some time, since the file has 1,303,973,801 bytes.
You can also use a FTP client program to connect to ftp.ebi.ac.uk, and download the /pub/databases/chembl/ChEMBLdb/latest/chembl_25_mysql.tar.gz file.
Table of Contents
Molecule Names and Identifications
Nucleobase, Nucleoside, Nucleotide, DNA and RNA
►ChEMBL Database - European Molecular Biology Laboratory
Call ChEMBL Data Web Service Directly
ChEMBL Data Resource - molecule
ChEMBL Data Resource - activity
ChEMBL Data Resource - document
ChEMBL Data Resource - chembl_id_lookup
chembl_webresource_client - Python Client
chembl_webresource_client - Usage Examples
chembl_webresource_client - RetryError Exception
PubChem Database - National Library of Medicine
INSDC (International Nucleotide Sequence Database Collaboration)
HGNC (HUGO Gene Nomenclature Committee)