Download ChEMBL Database

This section provides a tutorial example on how to download and install a copy of the ChEMBL database on a local computer.

If you want to run a local instance of the ChEMBL database, you can download a copy of its data in MySQL format as described in this tutorial.

1. Go to the ChEMBL Website at https://www.ebi.ac.uk/chembl/.

2. Click "Downloads" in the menu and select "ChEMBLdb 25" to go the download FTP directory.

3. Log in as a guest and go to the "latest" directory.

4. Download the chembl_25_mysql.tar.gz file. This may take some time, since the file has 1,303,973,801 bytes.

You can also use a FTP client program to connect to ftp.ebi.ac.uk, and download the /pub/databases/chembl/ChEMBLdb/latest/chembl_25_mysql.tar.gz file.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

ChEMBL Database - European Molecular Biology Laboratory

 What Is ChEMBL

 ChEMBL Speical Web Portals

Download ChEMBL Database

 ChEMBL FTP Repository

 ChEMBL Web Services API

 Call ChEMBL Data Web Service Directly

 ChEMBL Data Resource - molecule

 ChEMBL Data Resource - activity

 ChEMBL Data Resource - assay

 ChEMBL Data Resource - document

 ChEMBL Data Resource - target

 ChEMBL Data Resource - chembl_id_lookup

 ChEMBL Related Tools

 chembl_webresource_client - Python Client

 chembl_webresource_client - Usage Examples

 chembl_webresource_client - RetryError Exception

 ChEMBL Terminologies

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB